Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| LGG | rs78496266 | chr10:81686762 | C/T | 5.98E-5 | 404 | 15.3 | 13.13 | 21.82 | KM Plot |
| LGG | rs78509255 | chr4:867790 | T/A | 0 | 404 | 15.57 | 13.67 | 0.23 | KM Plot |
| LGG | rs78550378 | chr2:17901372 | T/C | 1.44E-8 | 406 | 15.3 | 15.67 | 7.33 | KM Plot |
| LGG | rs7856276 | chr9:126947508 | G/T | 1.38E-6 | 405 | 15.35 | 11.47 | 12.92 | KM Plot |
| LGG | rs7859444 | chr9:34024808 | C/G | 6.49E-6 | 404 | 15.37 | 16.38 | 6.13 | KM Plot |
| LGG | rs7859747 | chr9:33804523 | T/C | 2.42E-5 | 405 | 15.73 | 15.7 | 6.13 | KM Plot |
| LGG | rs7862106 | chr9:95476441 | C/G | 0.000148 | 407 | 15.17 | 17.7 | 7.12 | KM Plot |
| LGG | rs78630107 | chr3:168568129 | G/A | 2.99E-5 | 404 | 15.57 | 13.7 | 4.1 | KM Plot |
| LGG | rs78641188 | chr7:73256106 | G/A | 6.63E-8 | 407 | 15.47 | 14.48 | 8.07 | KM Plot |
| LGG | rs7866996 | chr9:94623611 | A/C | 6.99E-5 | 407 | 15.18 | 16.47 | 17.55 | KM Plot |
| LGG | rs7874574 | chr9:126946917 | G/C | 1.7E-6 | 405 | 15.37 | 11.1 | 12.92 | KM Plot |
| LGG | rs7874692 | chr9:126947172 | C/T | 1.7E-6 | 405 | 15.37 | 11.1 | 12.92 | KM Plot |
| LGG | rs7874729 | chr9:126947301 | A/G | 1.69E-6 | 406 | 15.37 | 10.73 | 12.92 | KM Plot |
| LGG | rs78759118 | chr20:3356537 | C/A | 1.04E-7 | 406 | 15.93 | 11.55 | 6.83 | KM Plot |
| LGG | rs78770755 | chr8:49683590 | G/A | 5.55E-16 | 407 | 15.7 | 13.13 | 5.17 | KM Plot |